BIOINDICATORS FOR MONITORING SOIL BIODIVERSITY AND SOIL ECOSYSTEM SERVICES
Keywords:
soil microbial funtionality, microorganisms, soil microbial taxonomyAbstract
Soil is crucial for the long-term sustainability of agricultural/agrarian systems and the environment; these affect all soil components and can have a deep impact on soil biodiversity. Soil biodiversity plays a crucial role in providing ecosystem services, supporting soil multifunctionality and the value it provides to humanity. Therefore, it is necessary to monitor, conserve, restore and improve soil biodiversity that can be classified into abundance, composition, functionality, interactions and processes that will allow maintaining soil and its functionality for present and future generations. Therefore, the objective of this article is to know the different bioindicators of soil microbial biodiversity in order to integrate them into sustainable soil management policies. Measurements of different bioindicators e. g. Total organic carbon, microbial carbon biomass, soil respiration, measurements of enzymatic activities related to the C, N and P cycles, DNA metabarcoding, microscopy and network analysis, among others, will help us monitor soil health and apply appropriate measures for sustainable agricultural management under a global change scenario.
References
Bardgett, R., y Putten, W. (2014). Belowground biodiversity and ecosystem functioning. Nature. 515. 505-11. 10.1038/nature13855.
Bastida, F., Zsolnay, A., Hernández, T., y García, C. (2008). Present and future of soil quality indices: A biological perspective. Geoderma 147:159–171. https://doi.org/10.1016/j.geoderma.2008.08.007
Boafo, D. K., Kraisornpornson, B., Panphon, S., Owusu, B.E., y Amaniampong, P.N. (2020). Effect of organic soil amendments on soil quality in oil palm production. Applied Soil Ecology, 147, 103358. http://dx.doi.org/10.1016/j.apsoil.2019.09.008
Bongers, T., y Ferris. H. (1999). “Nematode Community Structure as a Bioindicator in Environmental Monitoring. Trends in Ecology & Evolution 14 (6): 224–28. https://doi.org/10.1016/S0169-5347 (98)01583-3.
Brussaard, (1997). Biodiversity and Ecosystem functioning- Soil Ambio 26:563-570.
Frostegård, A., Tunlid. A., y Bååth, E. (2011). Use and misuse of PLFA measurements in soils. Soil Biology and Biochemistry 43: 1621-1625. - doi: 10.1016/j.soilbio.2010.11.021
Kawanobe, M., Toyota, K., y Ritz. K. (2021). “Development and Application of a DNA Metabarcoding Method for Comprehensive Analysis of Soil Nematode Communities.” Applied Soil Ecology 166: 103974. https://doi.org/10.1016/j. apsoil.2021.103974.
Knight, R., Vrbanac, A., Taylor, B.C., et al. (2018). Best practices for analysing microbiomes Nature Reviews Microbiology, 16: 410-422 doi: 10.1038/s41579-018-0029-9.
Lal, R. (2004). Soil C sequestration impacts on global climate change and food security. Science 304, 1623–1627. DOI: 10.1126/science.1097396
Lavelle, P., y Spain, A.V. (2001). Soil Ecology. Kluwer Academic Publishers, New York.
https://doi.org/10.1007/978-94-017-5279-4
Lehmann, J., Bossio, D.A., Kögel-Knabner, I., et al. (2020). The concept and future prospects of soil health. Nature Reviews Earth & Environment 1, 544–553. https://doi.org/10.1038/s43017-020-0080-8
Liang, S., Deng, J., Jiang, Y., Wu, S., Zhou, Y., y Zhu, W. (2020). Functional distribution of bacterial community under different land use patterns based on FaProTax function prediction. Polish Journal of environmental Studies 29 (2) 1245-1261. https://doi.org/10.15244/pjoes/108510
Lupatini, M., Suleiman, A.K.A., Jacques, R.J.S., Antoniolli, Z.I., de Siqueira Ferreira, A., Kuramae, E.E. et al. (2014). Network topology reveals high connectance levels and few key microbial genera within soils. Frontiers in Environmental Science 2: 10. |https://doi.org/10.3389/fenvs.2014.00010
Mark A. A., Bender S.F., y van der Heijden M.G.A. (2023). Enumerating Soil Biodiversity. PNAS. 120 (33) e2304663120. https://doi.org/10.1073/pnas.2304663120
Matchado, M.F., Lauber, M., Reitmeier, S., K et al. (2021). Network analysis methods for studying microbial communities: A mini review. Computational and Structural Biotechnology Journal, 19:2687-2698, https://doi.org/10.1016/j.csbj.2021.05.001.
Põlme, S., Abarenkov, K., Henrik Nilsson, R. et al. (2020). FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles. Fungal Diversity 105, 1–16. https://doi.org/10.1007/s13225-020-00466-2
Porter, T. M., Morris, D.M., Basiliko, N. et al. (2019). “Variations in Terrestrial Arthropod DNA Metabarcoding Methods Recovers Robust Beta Diversity but Variable Richness and Site Indicators.” Scientifc Reports 9 (1): 18218. https://doi.org/10.1038/s41598-019-54532-0.
Porter, T.M., y Hajibabaei, M. (2018). Scaling up: A guide to high-throughput genomic approaches for biodiversity analysis. Molecular Ecology. 27:313–338. https://doi.org/10.1111/mec.14478
Raza, S., Irshad, A., Margenot, A., et al. (2024). Inorganic carbon is overlooked in global soil carbon research: A bibliometric analysis. Geoderma 443, 116831. https://doi.org/10.1016/j.geoderma.2024.116831
Ronchi, S., Salata, S., Arcidiacono, A., Piroli, E., y Montanarella, L. (2019). Policy instruments for soil protection among the EU member states: A comparative analysis. Land Use Policy, 82, 763–780.
Starr, E. P., Shi, S., Blazewicz, S. J., Probst, A. J., Herman, D. J., Firestone, M. K., et al. (2018). Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbial-processed plant-derived carbon. Microbiome 6:122. 10.1186/s40168-018-0499-z
Wall, D.H., Bardgett, R.D., Behan-Pelletier, V. (2012). Soil Ecology and Ecosystem Services. Oxford University Press, UK (2012)
Watts, C., Dopheide, A., Holdaway, R. (2019). “DNA Metabarcoding as a Tool for Invertebrate Community Monitoring: A Case Study Comparison with Conventional Techniques.” Austral Entomology 58 (3): 675–86. https://doi.org/10.1111/aen.12384.
Downloads
Published
How to Cite
Issue
Section
License
Copyright (c) 2024 Margarita Ros, Luna Medrano, Maria del Mar Alguacil, Javier Alejandre, Gema Del Rio, Daniel Sacristan, Manuel Delgado-Banquerizo, Antonio Rafael Sánchez-Rodríguez, Raul Ochoa-Hueso, Jose Antonio Pascual

This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.